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Last pushed: 2 years ago
Short Description
A minimal Pacbio codebase installation (from Github source) to run GenomicConsensus/Quiver
Full Description

For better or worse, this is how I use it and it works:

> sudo docker run -v /data:/data -t -i txje/pb:v0 /bin/bash
# variantCaller --algorithm=quiver /data/reads.sorted.cmp.h5 -r ref.fasta -o /data/variants.gff -o /data/consensus.fasta -o /data/consensus.fastq --verbose --threaded

May add more of the codebase as I need it...

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