ummidock/emm_typing_admiralenola

Sponsored OSS

By Faculty of Medicine

Updated over 6 years ago

Typing of the emm gene of Streptococcus pyogenes (and other Streptococci)

Image
Data Science
Languages & Frameworks

58

docker-emm_typing_AdmiralenOla

Docker Automated buil

Docker image with emm_typing software (GitHub page).

emm_typing

"Typing of the emm gene of Streptococcus pyogenes (and other Streptococci)". From here.


Usage

You can download and run this image using the following commands:

# Get Docker image
docker pull ummidock/emm_typing_admiralenola:0.4-01

# Run emm_typing with default DB
docker run --rm -u $(id -u):$(id -g) -it -v /local/folder/data:/data/ ummidock/emm_typing_admiralenola:0.4-01 emm_typing --outdir /data/output_dir/ --fasta /data/sample_1.fasta /data/sample_2.fasta

Image Content

This Docker image contains:

Docker Pull Command

docker pull ummidock/emm_typing_admiralenola