Public Repository

Last pushed: 2 years ago
Short Description
Reference environment for ['Predictive modelling of gene expression ..']
Full Description

Overview

This is the reference environment for the manuscript 'Predictive modelling of gene expression from transcriptional regulatory elements' (Budden, D. M., Hurley, D. G. & Crampin, E. J. Predictive modelling of gene expression from transcriptional regulatory elements. Brief. Bioinform. bbu034 (2014). doi:10.1093/bib/bbu034. It executes code to reproduce specific results described in the manuscript. You can find more information about this research at the project page here.

To find other versions of this reference environment, see Other Links below. To learn more about reference environments, see the detailed description here.

Instructions for use

This version of the reference environment is a Docker container. To use it, install Docker, then do:

$ sudo docker pull uomsystemsbiology/budden2014predictive
$ sudo docker run uomsystemsbiology/budden2014predictive /sbin/my_init -- ./run_experiments.sh
$ sudo docker run uomsystemsbiology/budden2014predictive /sbin/my_init -- ./generate_figures.sh

This will start the container and execute scripts to reproduce the results described in the manuscript.

Other links

Manuscript link

Project page link

Vagrant-managed virtual machine

Bootable ISO

Docker Pull Command
Owner
uomsystemsbiology