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FROM tensorflow/tensorflow:0.9.0 MAINTAINER vsochat@stanford.edu RUN apt-get update RUN apt-get -y install libtiff5-dev RUN apt-get -y install libtiff5-dev RUN apt-get -y install build-essential RUN apt-get -y install cmake RUN apt-get -y install libgtk2.0-dev RUN apt-get -y install libjpeg8-dev RUN apt-get -y install zlib1g-dev RUN apt-get -y install libfreetype6-dev RUN apt-get -y install liblcms2-dev RUN apt-get -y install libwebp-dev RUN apt-get -y install tcl8.6-dev RUN apt-get -y install tk8.6-dev RUN apt-get -y install wget RUN apt-get -y install unzip RUN apt-get -y install python-tk RUN apt-get -y install python-dev RUN apt-get -y install pkg-config RUN apt-get -y install libffi-dev RUN apt-get -y install libssl-dev RUN apt-get -y install qt-sdk RUN apt-get -y install libavcodec-dev RUN apt-get -y install libavformat-dev RUN apt-get -y install libswscale-dev RUN apt-get -y install libjpeg-dev RUN apt-get -y install libpng-dev RUN apt-get -y install libtiff-dev RUN apt-get -y install libjasper-dev # Software dependencies. # This is equivalent of requirements.txt, run on image build RUN pip install --upgrade pip RUN pip install cycler==0.10.0 RUN pip install h5py==2.6.0 RUN pip install matplotlib==1.5.3 RUN pip install nose==1.3.7 RUN pip install numpy==1.11.0 RUN pip install pandas==0.18.1 RUN pip install Pillow==3.2.0 RUN pip install pydicom==0.9.9 RUN pip install pyparsing==2.1.10 RUN pip install python-dateutil==2.5.3 RUN pip install pytz==2016.4 RUN pip install runcython==0.2.5 RUN pip install scipy==0.18.1 RUN pip install six==1.10.0 RUN pip install simplejson # Build and install OpenCV RUN wget https://github.com/Itseez/opencv/archive/3.1.0.zip RUN unzip 3.1.0.zip RUN rm 3.1.0.zip RUN wget https://github.com/Itseez/opencv_contrib/archive/3.1.0.zip RUN unzip 3.1.0.zip RUN mkdir -p opencv-3.1.0/build WORKDIR opencv-3.1.0/build RUN cmake -D CMAKE_BUILD_TYPE=RELEASE \ -D CMAKE_INSTALL_PREFIX=/usr/local \ -D INSTALL_PYTHON_EXAMPLES=ON \ -D INSTALL_C_EXAMPLES=OFF \ -D OPENCV_EXTRA_MODULES_PATH=../../opencv_contrib-3.1.0/modules \ -D PYTHON_EXECUTABLE=/usr/bin/python \ -D BUILD_EXAMPLES=ON .. RUN make -j4 RUN make install RUN ldconfig # Make directories for code and data RUN mkdir /code RUN mkdir /data # Add the code ADD . /code # Download data models RUN wget https://stanford.box.com/shared/static/t8hvcgy4m5kh5m76pt9kg9s71kjmik6c.meta -O /code/boneage/data/bone-age-checkpoint.ckpt-19999.meta RUN wget https://stanford.box.com/shared/static/5936ydxx4qjk9rjkm1aun5fa9g5h27tt.ckpt-19999 -O /code/boneage/data/bone-age-checkpoint.ckpt-19999 # Clean up RUN apt-get autoremove -y RUN apt-get clean RUN rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/* RUN chmod u+x /code/boneage/cli.py WORKDIR /code/boneage ENTRYPOINT ["/usr/bin/python","/code/boneage/cli.py"]
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