FROM rocker/r-base
MAINTAINER [email protected]

# Install curl, ssl, and xml libraries
RUN apt-get update && apt-get install -y libcurl4-gnutls-dev \
                                         libssl-dev \
                                         libxml2-dev

# Install pandoc
RUN wget https://github.com/jgm/pandoc/releases/download/1.19.2/pandoc-1.19.2-1-amd64.deb
RUN dpkg -i pandoc-1.19.2-1-amd64.deb

# Install dependency packages
RUN R -e 'install.packages("rvest", repos = "http://cran.us.r-project.org")'
RUN R -e 'install.packages("tidyr", repos = "http://cran.us.r-project.org")'
RUN R -e 'install.packages("dplyr", repos = "http://cran.us.r-project.org")'
RUN R -e 'install.packages("ggplot2", repos = "http://cran.us.r-project.org")'
RUN R -e 'install.packages("rmarkdown", repos = "http://cran.us.r-project.org")'
RUN R -e 'install.packages("XML", repos = "http://cran.us.r-project.org")'
RUN R -e 'install.packages("readr", repos = "http://cran.us.r-project.org")'
RUN R -e 'install.packages("DT", repos = "http://cran.us.r-project.org")'
RUN R -e 'install.packages("wordcloud2", repos = "http://cran.us.r-project.org")'

# Add a simple nginx web server to serve Rmd notebooks
RUN apt-get install -y nginx python

# forward request and error logs to docker log collector
RUN ln -sf /dev/stdout /var/log/nginx/access.log \
	&& ln -sf /dev/stderr /var/log/nginx/error.log

EXPOSE 80 443
RUN mkdir /code
RUN mkdir /data
ADD . /code
RUN chmod u+x /code/*
WORKDIR /code
CMD /code/run.sh