Public | Automated Build

Last pushed: a month ago
Short Description
Reactivity Preprocessing for PANLab Pipeline
Full Description


Build context for a Flywheel Gear that
runs the reactivity preprocessing for the Williams PANLab's MRI analysis pipeline.

Reactivity Pipeline Stages

  • structural_analysis: creates warps from native to standard space and back
  • realign_unwarp: uses SPM realign and unwarp
  • tsdiffana: QC for fMRI that also produces regressors for noise
  • functional_coreg: Functional co-registration to structurals.
  • functional_bet: Extracts brain from functionals.
  • global_signal_removal: Regresses mean per-volume signal out of functionals
  • smooth: Uses SPM smooth to smooth images
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