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FROM ubuntu
MAINTAINER yookuda yookuda@nig.ac.jp
RUN apt-get update && \
apt-get clean
RUN apt-get install -y hmmer2 libxml-simple-perl && \
apt-get clean
RUN mkdir -p /usr/cbs/bio/src/rnammer-1.2
ADD rnammer-1.2.src.tar.Z /usr/cbs/bio/src/rnammer-1.2/
RUN cd /usr/cbs/bio/src/rnammer-1.2/ && \
cat xZvf rnammer-1.2.src.tar.Z | gunzip | tar xvf - && \
cp rnammer /usr/local/bin/ && \
rm rnammer-1.2.src.tar.Z
RUN mkdir -p /usr/cbs/bio/bin/linux64 && \
ln -s /usr/bin/hmm2search /usr/cbs/bio/bin/linux64/hmmsearch
RUN mkdir /data

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yookuda

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