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Docker Image for phylogeo

This Dockerfile uses parts of several of the rocker builds and adds
the neccesary Bioconductor packages to build phyloseq and phylogeo.

The docker build provides an RStudio interface where the phylogeo package is ready to be used. As per the rocker/rstudio instructions, you will need to start the docker image, get the ipaddress and then login:

# get the iP address
boot2docker ip
# download and run the phylogeo image
# (takes awhile the first time)
sudo docker run -d -p 8787:8787 zachcp/phylogeo
# visit the ipaddress at the default port
http://[ipaddress]:8787
# login with username/password
username: rstudio
password: rstudio
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zachcp
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