aammar/psnpbind-webapp repository overview

⁠PSnpBind Webapp

PSnpBind Webapp is the repository behind the PSnpBind website that is made to visualize the results of the PSnpBind dataset and provide a REST API to access its content.

This repository is part of the "PSnpBind, a database to highlight pocket SNPs effects on protein-ligand binding affinity" project and it is the final step after constructing the PSnpBind dataset as described in the main repository⁠.

Please prepare and build the docker using the following instruction.

⁠Build the Image locally

⁠if you want to build the docker image locally then clone this repository, "cd" to its directory and run:

docker build -t psnpbind-webapp .

⁠Run without building

⁠Run the following commands after setting the appropriate paths:

Note, you need to construct the MySQL data constructed from the main repository⁠.

docker network create psnpbind-network 

docker run --network=psnpbind-network --rm --name psnpbind-mysql  -d -v PATH_TO_MYSQL_DATA_FOLDER:/var/lib/mysql -e MYSQL_ROOT_PASSWORD=root mysql:5.7.33

docker run --network=psnpbind-network --rm --name psnpbind-webapp -d -v PATH_TO_DOCKINGS_DOWNLOADED_FROM_ZENODO:/dockings -p 8086:8086 aammar/psnpbind-webapp:1.0

⁠Now you are ready!