adgh456/tools repository overview

• bgzip

• tabix-1.3.1

• ncbi-remap ###compatible perl module had already installed on image ###download "remap_api.pl" from https://drive.google.com/open?id=0B0mYAR5jjhyqbENtTkZYcXlMZ1E⁠

-- command : perl remap_api.pl

-- example : remap 7.mutect.vcf (hg38) to hg37 to hg19perl remap_api.pl --mode alt-loci --from GCF_000001405.26 --dest GCF_000001405.13 --annotation 7.mutect.vcf --annot_out data/7.mutect.remap.vcf --report_out data/7.mutect.annotes.tsv --gbench_out data/7.mutect.annotes.gbp