Next Generation Sequencing docker storage container. Reference genomes go in here for the NgsEasy pipeline
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As a multi-component system, NGS pipeline setup is traditionally heavy on configuration. Our idea is to provide this in a simple encapsulated container. Users also typically wish to modify their own environments and run the pipeline on a wide range of hardware (workstations to clusters to cloud), being able to stand-up a pipeline with minimal fuss is made straightforward with this container.
The containers for this NGS pipeline:
#ngseasy pipeline https://github.com/KHP-Informatics/ngs/blob/master/containerized/pipeline/Dockerfile
#ngs_storage container https://github.com/KHP-Informatics/ngs/blob/master/containerized/storage/Dockerfile
Pipeline components are stored in /usr/local/pipeline/
The user for running the pipeline is: pipeman
Intermediary pipeine files are stored in the container under this dir structure:
[ ngseasy container ]... x n | |____[ storage container ] #reference genomes | |____{ mounted volume pwd } #pass config file from host | |____{ volume //data } #container output
Content type
Image
Digest
sha256:31c1f295d…
Size
85.7 MB
Last updated
almost 11 years ago
docker pull afolarin/ngs_storage