aguidetti/rcupcake-notebook repository overview

A simple notebook image with R and Python. Can be used as a standalone notebook, or in conjunction with Jupyterhub

Some popular bioconductor packages are pre-installed:

library(“oligo”) library("VariantAnnotation”) library(org.Hs.eg.db) library(devtools)

Update Feb 2018: Now includes the query tool RCupcake https://github.com/hms-dbmi/Rcupcake⁠

To run a standalone notebook, use the following command:

docker run -d -p 8888:8888 aguidetti/r-datascience-notebook