airrc/adc-api-mongodb-repository repository overview

⁠MongoDB database repository for the AIRR Data Commons (ADC) API

This is a dockerized instance of MongoDB V3 based upon the official mongo docker image⁠ with additional customizations specific to the AIRR Data Commons.

⁠Bug Reporting

File issues at the top-level ADC API github repository⁠.

⁠Deployments

It is expected that adc-api-mongodb-repository will be deployed as one component of the reference implementation for the AIRR Data Commons API.

⁠Configuration Procedure

Refer to the official mongo docker image⁠ about additional configurations settings.

Host configuration

Docker⁠ needs to be installed either directly on the host machine or within a VM.

Configuring adc-api-mongodb-repository

This is general information. More detailed instructions are provided in the overall configuration for AIRR Data Commons API⁠.

Copy dbsetup.defaults to dbsetup.js and edit accordingly, to provide customization of the Mongo instance, namely:

cd adc-api-mongodb-repository
cp dbsetup.defaults dbsetup.js
emacs dbsetup.js

Make sure NOT to accidently commit the dbsetup file with usernames and passwords into the git repository (note: we put dbsetup.js into the .gitignore as a failsafe!)