alkanlab/valor repository overview

Use only LongRanger/Lariat-generated BAM files. Please refer to https://github.com/BilkentCompGen/valor⁠ for a more complete README file.

Sample command line:

docker run --user=$UID -v /home/projects/valor:/input -v /home/projects/valor:/output alkanlab/valor -i /input/myinput.bam --sonic /input/ucsc_hg19.sonic --out /output/mytestrun -f INV,DUP,IDUP