amiklos/featrunner repository overview

Dockerfile:

FROM vistalab/fsl-v5.0:latest

COPY run.sh /run.sh

RUN chmod 755 /run.sh

ENTRYPOINT ["/run.sh"]

CMD [""]

---

run.sh:

chmod +x /etc/fsl/5.0/fsl.sh

source /etc/fsl/5.0/fsl.sh

export USER=root

echo feat has started

time feat ${1}

echo feat has ended

---

simple call example: docker run -it --rm -v [yourinputdirectroy]/:/input:ro -v [youroutputdirectory]:/output --name [nameofcontainer] amiklos/featrunner:v07 /input/model.fsf

The model.fsf (I usually create it with Feat on an example, then change the path of files in the fsf file in the text editor that it would show to /input and I save to the yourinputdirectory all the necessary files)