andypohl/ipyrad repository overview

⁠ipyrad: interactive assembly and analysis of RAD-seq data sets

Welcome to ipyrad, an interactive toolkit for assembly and analysis of restriction-site associated genomic data sets (e.g., RAD, ddRAD, GBS) for population genetic and phylogenetic studies.

⁠Documentation

Full documentation is available here (<http://ipyrad.readthedocs.io>_), where you will find installation instructions, example tutorials, and a full user guide.

⁠Quick Install

ipyrad is available through the Python package installer conda with all dependencies included. If you have conda installed you can simply run::

conda install -c ipyrad ipyrad

If you do not have conda installed then you will enjoy our complete installation instructions <http://ipyrad.readthedocs.io/installation.html>_.

⁠Getting Help

Join the ipyrad gitter channel and ask a question, request a feature, or flame the developers:

.. image:: https://badges.gitter.im/Join%20Chat.svg⁠ :alt: Join the chat at https://gitter.im/dereneaton/ipyrad⁠ :target: https://gitter.im/dereneaton/ipyrad?utm_source=badge&utm_medium=badge&utm_campaign=pr-badge&utm_content=badge⁠

⁠License

GPLv3

⁠Contributors

• Deren Eaton <[email protected]>_.
• Isaac Overcast <[email protected]>_.