The hervquant_pipeline is build based on this workflow: http://unclineberger.org/vincent/files/workflow-instructions/view
The pipeline used 3137 HERV transcripts as the reference index, using STAR.2.7.0a to map the RNAseq data and using Salmon.0.12.0 to quantify the alignment counts.
Content type
Image
Digest
Size
778.5 MB
Last updated
over 7 years ago
docker pull arielyh/hervquant_pipeline:v2