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aryeelab/cooler

By aryeelab

•Updated over 7 years ago

Cooler tools

Image
0

836

aryeelab/cooler repository overview

⁠topology_tools

⁠Setup
  1. Install cromwell

On Macs cromwell can be installed with

brew install cromwell

  1. Clone this repository

  2. Build the docker image(s)

cd Docker/hicpro
docker build -t aryeelab/hicpro .
⁠Running the WDL workflow in Cromwell

Preprocess HiC:

./cromwell run preprocess_hic.wdl imr90-rep1_hic_small.json 
./cromwell run preprocess_hic.wdl imr90-rep2_hic_small.json

⁠Merging reads across multiple samples

./cromwell run merge_hic_replicates.wdl merge_hic_replicates_imr90.json

Tag summary

Content type

Image

Digest

Size

498.5 MB

Last updated

over 7 years ago

docker pull aryeelab/cooler