A Docker wrapper for hg38db.
docker pull avelior/hg38db
docker run --rm -it -e QUERY={YOUR_QUERY} avelior/hg38db
docker run --rm -it -e QUERY='select chrom,chromStart,chromEnd,name,alleles,alleleFreqs from snp150 where name in ("rs2088175","rs2983855")' hg38db
docker run --rm -it -e QUERY={YOUR_QUERY} -e FILE_NAME={YOUR_FILE_NAME} -v {YOUR_FOLDER}://usr/src/app/share_folder avelior/hg38db
note that the container needs a volume to the share_folder inside the workdir in order to get files and write back.
docker run --rm -it -e QUERY='select chrom,chromStart,chromEnd,name,alleles,alleleFreqs from snp150 where name in ("rs2088175","rs2983855")' -e FILE_NAME="output" -v {YOUR_FOLDER}://usr/src/app/share_folder hg38db
Elior Avraham – [email protected]
Content type
Image
Digest
Size
66.6 MB
Last updated
over 6 years ago
docker pull avelior/hg38db