A Docker wrapper for plink2 - https://www.cog-genomics.org/plink/2.0/.
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A Docker wrapper for plink2.
docker pull avelior/plink2
docker run --rm -it -v {YOUR_FOLDER}://usr/src/app/share_folder avelior/plink2 {PLINK_COMMAND}
note that the container needs a volume to the share_folder inside the workdir in order to get files and write back.
docker run --rm -it -v ./://usr/src/app/share_folder avelior/plink2 bash -c "./plink2 --zst-decompress share_folder/all_phase3.pgen.zst > share_folder/all_phase3.pgen"
Elior Avraham – [email protected]
Content type
Image
Digest
Size
59.9 MB
Last updated
over 6 years ago
docker pull avelior/plink2