A Docker wrapper for SAMtools.
docker pull avelior/samtools
docker run --rm -it -v {YOUR_FOLDER}://usr/src/app/share_folder avelior/samtools {SAMTOOLS_COMMAND}
note that the container needs a volume to the share_folder inside the workdir in order to get files and write back.
docker run --rm -it -v ./://usr/src/app/share_folder avelior/samtools bash -c "samtools merge share_folder/finalBamFile.bam share_folder/*.bam"
Elior Avraham – [email protected]
Content type
Image
Digest
Size
27.6 MB
Last updated
over 6 years ago
docker pull avelior/samtools