baderlab/bio-epic repository overview

EPIC Docker Manual can be found here:

https://github.com/BaderLab/EPIC/blob/master/EPIC-Manual.pdf⁠

Installation:

• First, install Docker.
• Open terminal and enter: docker pull baderlab/bio-epic

Running EPIC in Docker (MacOSX, Linux):

• Create folder that contains all elution profiles

• Open terminal and cd into that folder

• Enter the following command:

DIR="$( cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd )" docker run --add-host="localhost:$(ifconfig en0 | grep inet | grep -v inet6 | awk '{print $2}')" -it --rm -p 8888:8888 -v "$DIR:/home/jovyan/work/input" baderlab/bio-epic start-notebook.sh --NotebookApp.iopub_data_rate_limit='100000000' --NotebookApp.token=''

Then the docker should be running the Jupyter notebook and can be accessed through the web address shown in the terminal.

Github for EPIC:

• https://github.com/BaderLab/EPIC⁠

If you have problems, you could contact Lucas (lucasming.huATmail.utoronto.ca) or Florian (florian.goebelsATgooglemail.com).