bhuvic/bioinformatics repository overview

Based on rocker/geospatial (https://github.com/rocker-org/rocker-versioned2⁠) with some modifications.

v9:

• add Vartrix, SPATA2

v8:

• add CNVkit, DoubletDecon and SeuratDisk

v7:

• rebuilt from scratch, updating packages along the way, ArchR excluded

v6:

• add ScanPy, leidenalg, python-igraph, and Scrublet

v5:

• add Boruta

v4:

• add Samtools, HTSLIB, BCFTools, Bedtools, datamash, SComatic and associated dependencies

v3:

• add RSpectra and CopyscAT

v2:

• add R libraries for multi-omic analysis (ex: ArchR, CellChat, ChAMP, ConsensusClusterPlus, InferCNV, Monocle3, Seurat, SingleR and many others)

v1 (base):

• Ubuntu Focal
• R v4.2.2
• RStudio v2022.12.0+353
• includes only standard rocker/geospatial R libraries