bigcatum/bridgedb repository overview

⁠Pull the Docker image.

If you want to have the latest version of the Docker Image with the latest ID mapping files, use:

sudo docker pull bigcatum/bridgedb:latest

In case you want to have a specific version of BridgeDb, you can add the version as tag instead of "latest":

sudo docker pull bigcatum/bridgedb:3.0.21-2.1.3

⁠Running the Docker Image.

Below is the command for running the Docker Image. In the command, change [PORT1] to configure ports that are not yet in use in your system. If the ports 8183 is not yet in use, you can simply use that one for [PORT1]. The environment variable [SERVER_URL] defines the host URL, depending on where the Docker Image will be run. If you do a local deployment, the [SERVER_URL] should be http://localhost⁠, with the [PORT1] that you chose. The [TAG] corresponds to the version of the Docker image that you pulled.

sudo docker run --name bridgedb --rm -p [PORT1]:8183 -e SERVER_URL='[SERVER_URL]:[PORT1]' bigcatum/bridgedb:[TAG]