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bio2byte/idpfun2-codon-bias-biophysical-python

By bio2byte

•Updated over 1 year ago

Python 3.13 image with requests, pandas, numpy and biopython for data processing

Image
Machine learning & AI
Developer tools
Data science
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bio2byte/idpfun2-codon-bias-biophysical-python repository overview

⁠IDPfun2 - Codon Bias & Biophysical Features - Python 3.13 Libraries

This Docker image provides a minimal, reproducible Python 3.13 environment preconfigured with essential libraries for codon bias analysis and protein biophysical feature extraction developed by Adrián Díaz⁠ from Bio2Byte⁠ at Vrije Universiteit Brussel (VUB, Belgium) during his secondment at SBG⁠ at Universidad Nacional de Quilmes (UNQ, Argentine) in May/June 2026.

⁠🐳 Image Overview

  • Base Image: python:3.13
  • Image Name: idpfun2-codon-bias-biophysics:latest
  • Maintainer: Bio2Byte
⁠📦 Included Libraries
PackageVersion SpecifierDescription
requests~=2.0For HTTP requests and RESTful API interactions
pandas~=2.0For efficient data manipulation and analysis
biopython~=1.83For biological sequence parsing and analysis

⁠🚀 Getting Started

⁠Pull the Image
docker pull bio2byte/idpfun2-codon-bias-biophysics:1.0.0
⁠Run the Container
docker run -it bio2byte/idpfun2-codon-bias-biophysics:1.0.0

⁠📄 License

This image uses open-source components licensed under their respective licenses.

⁠☎️ Support

For issues or contributions, please contact us via email⁠.

SBG-UNQ 🇦🇷 & Bio2Byte-VUB 🇧🇪

Tag summary

Content type

Image

Digest

sha256:6d8742539…

Size

410.5 MB

Last updated

over 1 year ago

docker pull bio2byte/idpfun2-codon-bias-biophysical-python:1.0.0