minimal docker container for bioinformatics software: samtools
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for more details please follow http://www.htslib.org/doc/#manual-pages
# Run shell with samtools & htlib install
docker run --rm -v /path/to/data:/bcdata biocan/samtools
# Run samtools
docker run --rm -v /path/to/data:/bcdata biocan/samtools samtools ARGS
# Run bgzip
docker run --rm -v /path/to/data:/bcdata biocan/samtools bgzip ARGS
# Run tabix
docker run --rm -v /path/to/data:/bcdata biocan/samtools tabix ARGS
# Run htsfile
docker run --rm -v /path/to/data:/bcdata biocan/samtools htsfile ARGS
Content type
Image
Digest
Size
83.8 MB
Last updated
almost 7 years ago
docker pull biocan/samtools:3.10-1.10