bioinfoipec/ensembl_vep repository overview

⁠Ensembl VEP

This image facilitates the usage of VEP⁠, a tool that determines the effect of your variants (SNPs, insertions, deletions, CNVs or structural variants) on genes, transcripts, and protein sequence, as well as regulatory regions.

⁠Using the Ensembl VEP image

You should adapt and run the following command: docker run --rm -v /your/data/dir:/data bioinfoipec/ensembl_vep <arguments>

To see the ensembl_vep help, just run docker run --rm bioinfoipec/ensembl_vep <argument> --help.

⁠Test data

To test the previous command, you can access the following link⁠.