bioinfoipec/fastp repository overview

⁠fastp

This image facilitates the usage of fastp⁠, a tool designed to provide fast all-in-one preprocessing for FastQ files. This tool is developed in C++ with multithreading supported to afford high performance.

⁠Using the fastp image

You should adapt and run the following command: docker run --rm -v /your/data/dir:/data bioinfoipec/fastp fastp <arguments>

To see the fastp help, just run docker run --rm bioinfoipec/fastp fastp --help.

⁠Test data

To test the previous command, you can access the following link⁠.