bioinfoipec/manta repository overview

⁠Manta

This image facilitates the usage of Manta⁠, that is a structural variant and indel caller for mapped sequencing data.

⁠Using Manta image

In order to use this image you need to run the folliwing command: docker run --rm -v /your/data/dir:/data bioinfoipec/manta configManta.py <options>

See the MANUAL⁠, for more details.

To obtain abbreviated help of an application, you just need to run: docker run --rm bioinfoipec/manta configManta.py -h.

⁠Test data

To test the previous command, you can access the following link⁠.