bioinfoipec/snpeff repository overview

⁠SnpEff

This image facilitates the usage of SnpEff⁠, that is a variant annotation and effect prediction tool. It annotates and predicts the effects of genetic variants (such as amino acid changes).

⁠Using SnpEff image

In order to use this image you need to run the folliwing command: docker run --rm -v /your/data/dir:/data bioinfoipec/snpEff snpEff <arguments>

See the MANUAL⁠, for more details.

To obtain help of an tool usage, you just need to run: docker run --rm bioinfoipec/snpEff snpEff -h.

⁠Test data

To test the previous command, you can access the following link⁠.