bioinfoipec/strelka repository overview

⁠strelka

This image facilitates the usage of strelka⁠, that calls somatic and germline small variants from mapped sequencing reads.

⁠Using strelka image

In order to use this image you need to run the following command: docker run --rm -v /your/data/dir:/data bioinfoipec/strelka <configureStrelkaGermlineWorkflow.py or configureStrelkaSomaticWorkflow.py> [options]*

See the MANUAL⁠, for more details.

To obtain abbreviated help of an application, you just need to run: docker run --rm bioinfoipec/strelka <configureStrelkaGermlineWorkflow.py or configureStrelkaSomaticWorkflow.py> -h.

⁠Test data

To test the previous command, you can access the following link⁠.