bioinfoipec/trim_galore repository overview

⁠TrimGalore

This image facilitates the usage of TrimGalore⁠, is a wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS data.

⁠Using TrimGalore image

In order to use this image you need to run the folliwing command: docker run --rm -v /your/data/dir:/data bioinfoipec/trim_galore trim_galore [options] <filename(s)>

See the MANUAL⁠, for more details.

To obtain abbreviated help of an application, you just need to run: docker run --rm bioinfoipec/trim_galore trim_galore -h.

⁠Test data

To test the previous command, you can access the following link⁠.