bioinfoipec/varscan repository overview

⁠VarScan

This image facilitates the usage of VarScan⁠, that is a variant calling and somatic mutation/CNV detection for next-generation sequencing data.

⁠Using VarScan image

In order to use this image you need to run the following command: docker run --rm -v /your/data/dir:/data bioinfoipec/varscan <COMMAND> [options]*

See the MANUAL⁠, for more details.

To obtain abbreviated help of an application, you just need to run: docker run --rm bioinfoipec/varscan <COMMAND> -h.

⁠Test data

To test the previous command, you can access the following link⁠.