Original author: Ben Glocker Docker version: Jonathan Passerat-Palmbach
scp -r [email protected]:/homes/jpassera/playground/dummy_data_biobank/abdo_to_stitch .# change to downloaded directory
pushd dummy_data_biobank
# retrieve latest image
docker pull biomedia/abdominal_stitching:latest
# concrete example from the install manual
docker run --rm -u $(id -u):$(id -g) -v `pwd`/abdo_to_stitch:/tmp/to_stitch biomedia/abdominal_stitching:latest -i /tmp/to_stitch/Dixon_BH_17s_Fa.nii.gz /tmp/to_stitch/Dixon_BH_17s_Fb.nii.gz /tmp/to_stitch/Dixon_BH_17s_F.nii.gz -o /tmp/to_stitch/Dixon_BH_17s_F--stitched.nii.gz
Subjects data originating from the UK Biobank project
Content type
Image
Digest
Size
55.8 MB
Last updated
over 9 years ago
docker pull biomedia/abdominal_stitching