biosemantics/gda-nanopubs repository overview

⁠Gene disease nanopubs docker

Docker image to create a virtuoso instance and options to load the gda nanopubs.

⁠Create docker container

docker run --name YOUR_CONTAINER_NAME -p 8890:8890 -p 1111:1111 
-e DBA_PASSWORD=YOUR_PASSWORD -e SPARQL_UPDATE=true 
-d biosemantics/gda-nanopubs

⁠To access the bash of the container

docker exec -it YOUR_CONTAINER_NAME bash

⁠Use the bash command below to download and load the gda nanopubs into the triple store

sh /data/scripts/load_gda_nps.sh