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blcdsdockerregistry/snpeff

By blcdsdockerregistry

•Updated about 4 years ago

Image
0

285

blcdsdockerregistry/snpeff repository overview

⁠docker-SnpEff

Dockerfile for SnpEff and SnpSift.

  • SnpEff is "the genetic variant annotation and functional effect prediction toolbox. It annotates and predicts the effects of genetic variants on genes and proteins (such as amino acid changes)."
  • SnpSift "[filters] large genomic datasets in order to find the most significant variants".

The image is located in the Boutros Lab Docker Hub repo: https://hub.docker.com/repository/docker/blcdsdockerregistry/snpeff/general⁠

⁠Documentation

SnpEff documentation is here⁠.

SnpSift documentation is here⁠.

HTSlib documentation is here⁠; and HTSlib GitHub page is here⁠.

⁠Version

ToolVersion
SnpEff5.1d
SnpSift5.1d
HTSlib1.15.1

⁠References

  1. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3679285/⁠
  2. https://pcingola.github.io/SnpEff/⁠
  3. James K Bonfield, John Marshall, Petr Danecek, Heng Li, Valeriu Ohan, Andrew Whitwham, Thomas Keane, Robert M Davies. HTSlib: C library for reading/writing high-throughput sequencing data. GigaScience, Volume 10, Issue 2, February 2021, giab007, https://doi.org/10.1093/gigascience/giab007⁠

Tag summary

Content type

Image

Digest

sha256:58a67dc64…

Size

391.9 MB

Last updated

about 4 years ago

docker pull blcdsdockerregistry/snpeff:dev