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bm2lab/drsim

By bm2lab

•Updated over 4 years ago

A learning-based framework for drug annotation and repositioning based on transcriptional profile

Image
0

846

bm2lab/drsim repository overview

Usage:

  1. Pull image from dockerhub:
    docker pull bm2lab/drsim

  2. Run the image in interactive mode with your dataset:
    docker run -it bm2lab/drsim

  3. Change directory into /home/src:
    cd /home/src

  4. DrSim can be applied for :
    Drug annotation
    python DrugAno.py --help
    python DrugAno.py -ref DrugAnoRef.h5 -query query.tsv

    Drug repositionin
    python DrugRep.py --help
    python DrugRep.py -ref DrugRepRef.h5 -query query.tsv

For more information about DrSim, please refer to
DrSim Github repository (https://github.com/bm2-lab/DrSim⁠)

Tag summary

Content type

Image

Digest

Size

1.3 GB

Last updated

over 4 years ago

docker pull bm2lab/drsim