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bmpvieira/seqgrapher

By bmpvieira

•Updated almost 11 years ago

Image
0

1.1K

bmpvieira/seqgrapher repository overview

⁠SeqGrapheR

Simple GUI for graph based visualization of cluster of DNA sequence reads by Petr Novak⁠

Ubuntu 13.10 with SSH, R and SeqGrapheR

⁠Usage

# [Optional] Build Docker image (you can skip to the next step to fetch from registry)
docker build -t bmpvieira/seqgrapher .
# Run new container in detached mode with SSH server running and shared folder
docker run -d -p 42222:22 -v ~/share:/share bmpvieira/seqgrapher
# [OSX specific] Forward port to boot2docker VM (keep open and use another terminal)
boot2docker ssh -L 42222:localhost:42222 #password: tcuser
# Find IP address of the running container (check the PORTS column). On OSX it will always be localhost.
docker ps
# Connect to Docker container through SSH with X11 forward.
ssh root@localhost -p 42222 -Y #password: root
# Run SeqGrapheR
R
library(SeqGrapheR)
SeqGrapheR()

⁠License

MIT⁠

Tag summary

Content type

Image

Digest

sha256:0acc89d0d…

Size

362.5 MB

Last updated

almost 11 years ago

docker pull bmpvieira/seqgrapher