bmslab/freebayes repository overview

#---------------------------------------------------------------------------------- Freebayes Dockerfile Remember to put the dockerfile in the same directory of Freebayes Versions: Freebayes:v1.0.2-16 #----------------------------------------------------------------------------------

FROM ubuntu:16.04

WORKDIR /home

RUN apt-get update && apt-get install -y
build-essential
cmake
zlib1g-dev
libncurses-dev
git

#---------------------------------------------------------------------------------- #Let's build Freebayes! #----------------------------------------------------------------------------------

RUN mkdir /home/freebayes

ADD . /home/freebayes

WORKDIR /home/freebayes/freebayes_v1.0.2-16

RUN make

RUN ln -s /home/freebayes/freebayes_v1.0.2-16/bin/freebayes /usr/local/bin

#----------------------------------------------------------------------------------

ENV HELP='usage: freebayes -f [REFERENCE] [OPTIONS] [BAM FILES] >[OUTPUT]'

CMD echo $HELP