bmslab/snver repository overview

#---------------------------------------------------------------------------------- SNVer Dockerfile Remember to put the dockerfile in the same directory of SNVer Versions: SNVer:v0.5.3 #----------------------------------------------------------------------------------

FROM java:7

WORKDIR /home

RUN apt-get update && apt-get install -y
build-essential
cmake
zlib1g-dev
libncurses-dev
git

#---------------------------------------------------------------------------------- #Let's build SNVer! #----------------------------------------------------------------------------------

ADD . /home

WORKDIR /home

RUN tar -x -f SNVer-0.5.3.tar

RUN ln -s /home/SNVerIndividual.jar /usr/local/bin

RUN ln -s /home/SNVerPool.jar /usr/local/bin

#----------------------------------------------------------------------------------

ENV HELP='\nUsage: java -jar SNVerIndividual.jar -i input_file -r reference_file [options]\nUsage: java -jar SNVerPool.jar -i input_directory -r reference_file [-c pool_info_file | -n number_of_haploids] [options]'

CMD echo $HELP