bmslab/somaticsniper repository overview

#---------------------------------------------------------------------------------- SomaticSniper Dockerfile Remember to put the dockerfile in the same directory of SomaticSniper Versions: SomaticSniper:v1.0.5.0 #----------------------------------------------------------------------------------

FROM ubuntu:16.04

WORKDIR /home

RUN apt-get update && apt-get install -y
build-essential
cmake
zlib1g-dev
libncurses-dev
git

ADD . /home

#---------------------------------------------------------------------------------- #Let's build SomaticSniper! #----------------------------------------------------------------------------------

WORKDIR /home/somatic-sniper

RUN mkdir build

WORKDIR /home/somatic-sniper/build

RUN cmake /home/somatic-sniper/

RUN make deps

RUN make -j

RUN ln -s /home/somatic-sniper/build/bin/bam-somaticsniper /usr/local/bin

#----------------------------------------------------------------------------------

ENV HELP='usage: bam-somaticsniper [options] -f <ref.fasta> <tumor.bam> <normal.bam> <snp_output_file>'

CMD echo $HELP