bmslab/varscan repository overview

#---------------------------------------------------------------------------------- Varscan2 Dockerfile Remember to put the dockerfile in the same directory of Varscan Versions: Varscan:v2.3.9 #----------------------------------------------------------------------------------

FROM java:7

WORKDIR /home

RUN apt-get update && apt-get install -y
build-essential
cmake
zlib1g-dev
libncurses-dev
git

ADD . /home

#---------------------------------------------------------------------------------- #Let's build Varscan! #----------------------------------------------------------------------------------

WORKDIR /home/Varscan

RUN ln -s /home/Varscan/VarScan.v2.3.9.jar /usr/local/bin

#----------------------------------------------------------------------------------

ENV HELP='USAGE: java -jar VarScan.v2.3.9.jar [COMMAND] [OPTIONS]'

CMD echo $HELP