bradgkyer/bioinformatics repository overview

spades
canu
prokka
kraken
fastx_toolkit
bowtie2
seqtk
bwa
samtools
fastqc
ucsc-bedsort
ucsc-bedgraphtobigwig
bedtools
deeptools
homer
seacr
trnascan-se
metagene_annotator
scanpy
gsea
gseapy
blastalign
hisat2
star
bbmap

quast.py
pydeseq2

WORKDIR /data/

services:
  bioinformatics:
    platform: linux/amd64
    container_name: bioinformatics
    restart: always
    image: bradgkyer/bioinformatics:latest
    volumes:
      - ./data:/data
    command: /bin/bash -c "conda init --all && exec sleep infinity"

# bash

(base) root@eac807a5095d:/data# conda activate bioinformatics

# bash
(base) root@eac807a5095d:/data# conda activate bioinformatics
(bioinformatics) root@eac807a5095d:/data#