brats/brats_midl-20 repository overview

Format data according to template: https://github.com/BraTS/Instructions/tree/master/docker_templates/template_2020⁠

Note that this application requires a segmentation file to be present.

processing starts right when spinning up docker container

OR

use BraTS Toolkit to generate segmentations: https://github.com/neuronflow/BraTS-Toolkit⁠ (survival prediction support is a work in progress and might not be live yet)