brisbanebirdteam/build-env
Brisbane Bird Atlas build environment
Image
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brisbanebirdteam/build-env repository overview
Brisbane Bird Atlas Build Environment
This repository contains the Docker build environment for compiling the Brisbane Birds Atlas.
Usage
To download the image, execute the following command in the terminal:
docker pull "brisbanebirdteam/build-env:latest"
Software
This image contains R (version 3.4.4), TinyTex, Pandoc (version 2.2.1-1), and assorted Debian packages for geospatial analysis. It also contains R packages for manipulating data and building the atlas website (obtained from the Microsoft R Application Network snapshot taken on 16th May 2018).
| Package | Version | Description |
|---|---|---|
| assertthat | 0.2.0 | Easy Pre and Post Assertions |
| backports | 1.1.2 | Reimplementations of Functions Introduced Since R-3.0.0 |
| base64enc | 0.1-3 | Tools for base64 encoding |
| BH | 1.66.0-1 | Boost C++ Header Files |
| bindr | 0.1.1 | Parametrized Active Bindings |
| bindrcpp | 0.2.2 | An ‘Rcpp’ Interface to Active Bindings |
| bit | 1.1-13 | A Class for Vectors of 1-Bit Booleans |
| bit64 | 0.9-7 | A S3 Class for Vectors of 64bit Integers |
| bookdown | 0.7 | Authoring Books and Technical Documents with R Markdown |
| boxr | 0.3.4 | Interface for the ‘Box.com API’ |
| cellranger | 1.1.0 | Translate Spreadsheet Cell Ranges to Rows and Columns |
| classInt | 0.2-3 | Choose Univariate Class Intervals |
| cli | 1.0.0 | Helpers for Developing Command Line Interfaces |
| clipr | 0.4.0 | Read and Write from the System Clipboard |
| clisymbols | 1.2.0 | Unicode Symbols at the R Prompt |
| colorspace | 1.3-2 | Color Space Manipulation |
| crayon | 1.3.4 | Colored Terminal Output |
| crosstalk | 1.0.0 | Inter-Widget Interactivity for HTML Widgets |
| curl | 3.2 | A Modern and Flexible Web Client for R |
| data.table | 1.11.2 | Extension of data.frame |
| DBI | 1.0.0 | R Database Interface |
| desc | 1.2.0 | Manipulate DESCRIPTION Files |
| devtools | 1.13.5 | Tools to Make Developing R Packages Easier |
| dichromat | 2.0-0 | Color Schemes for Dichromats |
| digest | 0.6.15 | Create Compact Hash Digests of R Objects |
| docopt | 0.4.5 | Command-Line Interface Specification Language |
| doParallel | 1.0.11 | Foreach Parallel Adaptor for the ‘parallel’ Package |
| dplyr | 0.7.4 | A Grammar of Data Manipulation |
| e1071 | 1.6-8 | Misc Functions of the Department of Statistics, Probability Theory Group (Formerly: E1071), TU Wien |
| enc | 0.2.0 | Portable Tools for ‘UTF-8’ Character Data |
| evaluate | 0.10.1 | Parsing and Evaluation Tools that Provide More Details than the Default |
| FNN | 1.1 | Fast Nearest Neighbor Search Algorithms and Applications |
| forcats | 0.3.0 | Tools for Working with Categorical Variables (Factors) |
| foreach | 1.4.4 | Provides Foreach Looping Construct for R |
| fs | 1.2.2 | Cross-Platform File System Operations Based on ‘libuv’ |
| ggplot2 | 2.2.1.9000 | Create Elegant Data Visualisations Using the Grammar of Graphics |
| gh | 1.0.1 | ‘GitHub’ ‘API’ |
| git2r | 0.21.0 | Provides Access to Git Repositories |
| glue | 1.2.0 | Interpreted String Literals |
| gridExtra | 2.3 | Miscellaneous Functions for “Grid” Graphics |
| gtable | 0.2.0 | Arrange ‘Grobs’ in Tables |
| haven | 1.1.1 | Import and Export ‘SPSS’, ‘Stata’ and ‘SAS’ Files |
| hexbin | 1.27.2 | Hexagonal Binning Routines |
| highr | 0.6 | Syntax Highlighting for R Source Code |
| hms | 0.4.2 | Pretty Time of Day |
| htmltools | 0.3.6 | Tools for HTML |
| htmlwidgets | 1.2 | HTML Widgets for R |
| httpuv | 1.4.3 | HTTP and WebSocket Server Library |
| httr | 1.3.1 | Tools for Working with URLs and HTTP |
| ini | 0.3.0 | Read and Write ‘.ini’ Files |
| iterators | 1.0.9 | Provides Iterator Construct for R |
| jsonlite | 1.5 | A Robust, High Performance JSON Parser and Generator for R |
| kableExtra | 0.8.0 | Construct Complex Table with ‘kable’ and Pipe Syntax |
| knitr | 1.20 | A General-Purpose Package for Dynamic Report Generation in R |
| labeling | 0.3 | Axis Labeling |
| later | 0.7.2 | Utilities for Delaying Function Execution |
| lazyeval | 0.2.1 | Lazy (Non-Standard) Evaluation |
| leaflet | 2.0.0 | Create Interactive Web Maps with the JavaScript ‘Leaflet’ Library |
| littler | 0.3.3 | R at the Command-Line via ‘r’ |
| lubridate | 1.7.4 | Make Dealing with Dates a Little Easier |
| lwgeom | 0.1-4 | Bindings to Selected ‘liblwgeom’ Functions for Simple Features |
| magrittr | 1.5 | A Forward-Pipe Operator for R |
| markdown | 0.8 | ‘Markdown’ Rendering for R |
| memoise | 1.1.0 | Memoisation of Functions |
| mime | 0.5 | Map Filenames to MIME Types |
| munsell | 0.4.3 | Utilities for Using Munsell Colours |
| openssl | 1.0.1 | Toolkit for Encryption, Signatures and Certificates Based on OpenSSL |
| openxlsx | 4.0.17 | Read, Write and Edit XLSX Files |
| patchwork | 0.0.1 | The Composer of ggplots |
| piggyback | 0.0.0.9900 | Managing Larger Data on a GitHub Repository |
| pillar | 1.2.2 | Coloured Formatting for Columns |
| pkgconfig | 2.0.1 | Private Configuration for ‘R’ Packages |
| plogr | 0.2.0 | The ‘plog’ C++ Logging Library |
| plotly | 4.7.1 | Create Interactive Web Graphics via ‘plotly.js’ |
| plyr | 1.8.4 | Tools for Splitting, Applying and Combining Data |
| png | 0.1-7 | Read and write PNG images |
| promises | 1.0.1 | Abstractions for Promise-Based Asynchronous Programming |
| purrr | 0.2.4 | Functional Programming Tools |
| R6 | 2.2.2 | Classes with Reference Semantics |
| raster | 2.6-7 | Geographic Data Analysis and Modeling |
| RColorBrewer | 1.1-2 | ColorBrewer Palettes |
| Rcpp | 0.12.16 | Seamless R and C++ Integration |
| RcppTOML | 0.1.3 | ‘Rcpp’ Bindings to Parser for Tom’s Obvious Markup Language |
| readr | 1.1.1 | Read Rectangular Text Data |
| readxl | 1.1.0 | Read Excel Files |
| rematch | 1.0.1 | Match Regular Expressions with a Nicer ‘API’ |
| rematch2 | 2.0.1 | Tidy Output from Regular Expression Matching |
| remotes | 1.1.1 | R Package Installation from Remote Repositories, Including ‘GitHub’ |
| reshape2 | 1.4.3 | Flexibly Reshape Data: A Reboot of the Reshape Package |
| rgdal | 1.2-20 | Bindings for the ‘Geospatial’ Data Abstraction Library |
| rgeos | 0.3-26 | Interface to Geometry Engine - Open Source (‘GEOS’) |
| rio | 0.5.10 | A Swiss-Army Knife for Data I/O |
| rlang | 0.2.0 | Functions for Base Types and Core R and ‘Tidyverse’ Features |
| rmarkdown | 1.9 | Dynamic Documents for R |
| rnaturalearth | 0.1.0 | World Map Data from Natural Earth |
| rnaturalearthhires | 0.1.0 | High Resolution World Vector Map Data from Natural Earth used in rnaturalearth |
| RPostgreSQL | 0.6-2 | R Interface to the ‘PostgreSQL’ Database System |
| rprojroot | 1.3-2 | Finding Files in Project Subdirectories |
| rstudioapi | 0.7 | Safely Access the RStudio API |
| rvest | 0.3.2 | Easily Harvest (Scrape) Web Pages |
| scales | 0.5.0 | Scale Functions for Visualization |
| selectr | 0.4-1 | Translate CSS Selectors to XPath Expressions |
| sf | 0.6-2 | Simple Features for R |
| shiny | 1.0.5 | Web Application Framework for R |
| smoothr | 0.1.0 | Smooth and Tidy Spatial Features |
| sourcetools | 0.1.7 | Tools for Reading, Tokenizing and Parsing R Code |
| sp | 1.2-7 | Classes and Methods for Spatial Data |
| spData | 0.2.8.3 | Datasets for Spatial Analysis |
| stringi | 1.1.7 | Character String Processing Facilities |
| stringr | 1.3.0 | Simple, Consistent Wrappers for Common String Operations |
| styler | 1.0.1 | Non-Invasive Pretty Printing of R Code |
| tibble | 1.4.2 | Simple Data Frames |
| tidyr | 0.8.0 | Easily Tidy Data with ‘spread()’ and ‘gather()’ Functions |
| tidyselect | 0.2.4 | Select from a Set of Strings |
| tinytex | 0.8.1 | Helper Functions to Install and Maintain ‘TeX Live’, and Compile ‘LaTeX’ Documents |
| udunits2 | 0.13 | Udunits-2 Bindings for R |
| units | 0.5-1 | Measurement Units for R Vectors |
| usethis | 1.3.0 | Automate Package and Project Setup |
| utf8 | 1.1.3 | Unicode Text Processing |
| viridis | 0.5.1 | Default Color Maps from ‘matplotlib’ |
Tag summary
Content type
Image
Digest
Size
1.1 GB
Last updated
about 7 years ago
docker pull brisbanebirdteam/build-env