bruggerk/rnaseq repository overview

⁠rnaseq_docker

This is a single container version docker of nf-core/rnaseq⁠, with the only differences being that the pipeline and pipeline framework being added to the container

⁠How to use this image

Extensive description on how to use the pipeline can be found on the project page⁠. However as this is a containerised version "docker run bruggerk/rnaseq:latest" is identical with "nextflow pull nf-core/rnaseq". However as this is a container version of the pipeline you will need to make the local disk available with in the container.

# To run docker mounting your current working directory in /run, and execute the program in /run
docker run -v`pwd`:/run/ -w /run bruggerk/rnaseq:latest