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bunop/dorado

By bunop

•Updated 6 months ago

Oxford Nanopore's Basecaller dorado built in nvidia/cuda base image

Image
0

4.7K

bunop/dorado repository overview

⁠docker-dorado

This repository contains a Dockerfile for building a Docker image for dorado⁠ software with support for CUDA. Built images are available on Docker Hub⁠.

⁠Available images

Image nameCUDA versionDorado version
bunop/dorado:v0.9.6-cuda11.8.011.8v0.9.6
bunop/dorado:v0.9.6-cuda12.8.012.8v0.9.6
bunop/dorado:v1.0.0-cuda11.8.011.8v1.0.0
bunop/dorado:v1.0.0-cuda12.8.012.8v1.0.0
bunop/dorado:v1.0.2-cuda11.8.011.8v1.0.2
bunop/dorado:v1.0.2-cuda12.8.012.8v1.0.2
bunop/dorado:v1.4.0-cuda11.8.011.8v1.4.0
bunop/dorado:v1.4.0-cuda12.8.012.8v1.4.0
bunop/dorado:latest12.8v1.4.0

⁠Pull image from Docker Hub

get the latest image with:

docker pull bunop/dorado:latest

Or get a specific version with:

docker pull bunop/dorado:v1.4.0-cuda11.8.0

⁠Build image locally

Clone this repository⁠ from GitHub:

git clone https://github.com/bunop/docker-dorado.git

Then enter into docker-dorado directory and build the image with:

docker build --build-arg BUILD_JOBS=4 \
    --build-arg CUDA_VERSION=11.8.0 \
    --build-arg DORADO_VERSION=v1.4.0 \
    -t bunop/dorado:v1.4.0-cuda11.8.0 .

Where BUILD_JOBS is the number of jobs to use for building the image, CUDA_VERSION is the CUDA version to use and DORADO_VERSION is the version of dorado to use. The default values are the available number of cores, 12.8.0 and v1.4.0 respectively.

Tag summary

Content type

Image

Digest

sha256:d3c336c0a…

Size

3.8 GB

Last updated

6 months ago

docker pull bunop/dorado