Oxford Nanopore's Basecaller dorado built in nvidia/cuda base image
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This repository contains a Dockerfile for building a Docker image for dorado software with support for CUDA. Built images are available on Docker Hub.
| Image name | CUDA version | Dorado version |
|---|---|---|
bunop/dorado:v0.9.6-cuda11.8.0 | 11.8 | v0.9.6 |
bunop/dorado:v0.9.6-cuda12.8.0 | 12.8 | v0.9.6 |
bunop/dorado:v1.0.0-cuda11.8.0 | 11.8 | v1.0.0 |
bunop/dorado:v1.0.0-cuda12.8.0 | 12.8 | v1.0.0 |
bunop/dorado:v1.0.2-cuda11.8.0 | 11.8 | v1.0.2 |
bunop/dorado:v1.0.2-cuda12.8.0 | 12.8 | v1.0.2 |
bunop/dorado:v1.4.0-cuda11.8.0 | 11.8 | v1.4.0 |
bunop/dorado:v1.4.0-cuda12.8.0 | 12.8 | v1.4.0 |
bunop/dorado:latest | 12.8 | v1.4.0 |
get the latest image with:
docker pull bunop/dorado:latest
Or get a specific version with:
docker pull bunop/dorado:v1.4.0-cuda11.8.0
Clone this repository from GitHub:
git clone https://github.com/bunop/docker-dorado.git
Then enter into docker-dorado directory and build the image with:
docker build --build-arg BUILD_JOBS=4 \
--build-arg CUDA_VERSION=11.8.0 \
--build-arg DORADO_VERSION=v1.4.0 \
-t bunop/dorado:v1.4.0-cuda11.8.0 .
Where BUILD_JOBS is the number of jobs to use for building the image,
CUDA_VERSION is the CUDA version to use and DORADO_VERSION is the
version of dorado to use. The default values are the available number of cores,
12.8.0 and v1.4.0 respectively.
Content type
Image
Digest
sha256:d3c336c0a…
Size
3.8 GB
Last updated
6 months ago
docker pull bunop/dorado