bwawrik/qiime repository overview

MGMIC qiime docker

Ubuntu 14.01 QIIME 1.9.1 http://qiime.org⁠

⁠latest

V4 bug fixed: QIIME 1.9.0 PyNAST default reference alignment https://qiime.wordpress.com/2015/04/16/bug-fix-qiime-1-9-0-pynast-default-reference-alignment/⁠

⁠Installed Software

⁠:V4

• fastx_toolkit_0.0.13 | http://hannonlab.cshl.edu/fastx_toolkit/⁠
• Xvfb
• rpm
• MAFFT
• blast 2.2.31
• HMMER
• Metaxa

⁠:V3 / :latest

• fastx_toolkit_0.0.13
• Xvfb

⁠Qiime Build System information

Python version: 2.7.6 (default, Mar 22 2014, 22:59:56) [GCC 4.8.2] Python executable: /usr/bin/python QIIME library version: 1.9.0 QIIME script version: 1.9.0 qiime-default-reference version: 0.1.1 NumPy version: 1.9.1 SciPy version: 0.15.1 pandas version: 0.15.2 matplotlib version: 1.3.1 biom-format version: 2.1.3 h5py version: Not installed. qcli version: 0.1.1 pyqi version: 0.3.2 scikit-bio version: 0.2.3 PyNAST version: 1.2.2 Emperor version: 0.9.51 burrito version: 0.9.0 burrito-fillings version: Installed. sortmerna version: SortMeRNA version 2.0, 29/11/2014 sumaclust version: SUMACLUST Version 1.0.00 swarm version: Swarm 1.2.19 [Feb 15 2015 03:58:02] gdata: Installed.