calpolydatascience/rnaseq repository overview

⁠rnaseq Jupyter notebook

Notebook that is based off of GriffithLab repository here: https://github.com/griffithlab/rnaseq_tutorial/wiki/Installation⁠

⁠Packages that are installed:

• SAMtools
• bam-readcount
• HISAT2
• StringTie
• gffcompare
• htseq-count
• TopHat
• kallisto
• FastQC
• MultiQC
• Picard
• Flexbar
• Regtools
• RSeQc
• R

Note: This image will also have the rstudio plugin installed, so as to allow for using the RStudio Application if preferred