cannin/opencpu repository overview
OpenCPU in Docker
Build
Default
docker build -t cannin/opencpu:opencpu-2.0 .
docker build -t cannin/opencpu:enrichmentmap -f Dockerfile_enrichmentmap .
Custom Install
docker build -t cannin/opencpu:enrichmentmap -f Dockerfile_enrichmentmap .
docker pull cannin/opencpu:enrichmentmap
Run
Default
docker rm -f oc; docker run --name oc -t -p 80:80 -p 8004:8004 cannin/opencpu
docker rm -f oc; docker run --name oc -it -p 80:80 -p 8004:8004 cannin/opencpu bash
docker exec -it oc bash
Custom Container
# SKIP: docker rm -f oc; docker run --name oc -t -p 80:80 -p 8004:8004 cannin/opencpu:enrichmentmap
docker rm -f oc; docker run --name oc -it -p 80:80 -p 8004:8004 cannin/opencpu:enrichmentmap apache2ctl -D FOREGROUND
docker rm -f oc; docker run --name oc -it -p 80:80 -p 8004:8004 cannin/opencpu:enrichmentmap bash
docker exec -it oc bash
Call OpenCPU
curl http://localhost/ocpu/library/stats/R/rnorm/json -d "n=10&mean=5"
Access output and files
Public
curl http://public.opencpu.org/ocpu/library/stats/R/rnorm -d "n=10&mean=5"
curl http://public.opencpu.org/ocpu/tmp/x09e692cd2c/R/.val
curl http://public.opencpu.org/ocpu/tmp/x09e692cd2c/files/DESCRIPTION
Local/Custom Package
Generate a table with a set number of rows/columns
curl http://localhost/ocpu/library/enrichmentmap/R/getMatrix/json -d "n=100&r=10&c=10"
Call command that creates JSON file
curl http://localhost/ocpu/library/enrichmentmap/R/getJson -d "saveFile=TRUE"
Access JSON file
- NOTE: The ID "x06ee947c11" will change. The output from getJson will specify the ID.
curl http://localhost/ocpu/tmp/x06ee947c11/R/.val/print
curl http://localhost/ocpu/tmp/x06ee947c11/files/example.json
Access JSON output from function
The output from x can be parsed using JSON.parse()
- NOTE: Without parameters the function is returned
x = curl http://localhost/ocpu/library/enrichmentmap/R/getJsonStr/json -d "p=0"
JSON.parse(x)
Run getEnrichmentMap
Test
- Test at this URL: http://127.0.0.1/ocpu
- URL: ../library/enrichmentmap/R/getEnrichmentMap/json
- Parameter: genes: ["BRAF", "MDM2", "TP53"]
- Request type: POST
Tag summary
Content type
Image
Digest
Size
601.1 MB
Last updated
about 9 years ago
docker pull cannin/opencpu